Multi-Ethnic Genome-Wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.

TitleMulti-Ethnic Genome-Wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.
Publication TypeJournal Article
Year of Publication2020
AuthorsBaldassari, AR, Sitlani, CM, Highland, HM, Arking, DE, Buyske, S, Darbar, D, Gondalia, R, Graff, M, Guo, X, Heckbert, SR, Hindorff, LA, Hodonsky, CJ, Chen, Y-DIda, Kaplan, RC, Peters, U, Post, W, Reiner, AP, Rotter, JI, Shohet, RV, Seyerle, AA, Sotoodehnia, N, Tao, R, Taylor, KD, Wojcik, GL, Yao, J, Kenny, EE, Lin, HJ, Soliman, EZ, Whitsel, EA, North, KE, Kooperberg, C, Avery, CL
JournalCirc Genom Precis Med
Volume13
Issue4
Paginatione002680
Date Published2020 08
ISSN2574-8300
Abstract

BACKGROUND: We examined how expanding electrocardiographic trait genome-wide association studies to include ancestrally diverse populations, prioritize more precise phenotypic measures, and evaluate evidence for shared genetic effects enabled the detection and characterization of loci.

METHODS: We decomposed 10 seconds, 12-lead electrocardiograms from 34 668 multi-ethnic participants (15% Black; 30% Hispanic/Latino) into 6 contiguous, physiologically distinct (P wave, PR segment, QRS interval, ST segment, T wave, and TP segment) and 2 composite, conventional (PR interval and QT interval) interval scale traits and conducted multivariable-adjusted, trait-specific univariate genome-wide association studies using 1000-G imputed single-nucleotide polymorphisms. Evidence of shared genetic effects was evaluated by aggregating meta-analyzed univariate results across the 6 continuous electrocardiographic traits using the combined phenotype adaptive sum of powered scores test.

RESULTS: We identified 6 novels (, and ) and 87 known loci (adaptive sum of powered score test

CONCLUSIONS: Despite including one-third as many participants as published electrocardiographic trait genome-wide association studies, our study identified 6 novel loci, emphasizing the importance of ancestral diversity and phenotype resolution in this era of ever-growing genome-wide association studies.

DOI10.1161/CIRCGEN.119.002680
Alternate JournalCirc Genom Precis Med
PubMed ID32602732
PubMed Central IDPMC7520945
Grant List75N95020D00003 / DA / NIDA NIH HHS / United States
N01HC95160 / HL / NHLBI NIH HHS / United States
N01HC95169 / HL / NHLBI NIH HHS / United States
T32 HL129982 / HL / NHLBI NIH HHS / United States
U01 HG009080 / HG / NHGRI NIH HHS / United States
75N99020D00007 / OF / ORFDO NIH HHS / United States
UL1 TR001881 / TR / NCATS NIH HHS / United States
75N99020D00004 / OF / ORFDO NIH HHS / United States
HHSN268201100001I / HL / NHLBI NIH HHS / United States
HHSN268201500003C / HL / NHLBI NIH HHS / United States
75N90020D00002 / CL / CLC NIH HHS / United States
U01 HG007419 / HG / NHGRI NIH HHS / United States
UL1 RR025005 / RR / NCRR NIH HHS / United States
R01 ES020836 / ES / NIEHS NIH HHS / United States
N01HC95163 / HL / NHLBI NIH HHS / United States
UL1 TR001079 / TR / NCATS NIH HHS / United States
75N96020D00002 / ES / NIEHS NIH HHS / United States
HHSN268201100004I / HL / NHLBI NIH HHS / United States
U01 HG007416 / HG / NHGRI NIH HHS / United States
75N93020D00002 / AI / NIAID NIH HHS / United States
U01 HG009610 / HG / NHGRI NIH HHS / United States
75N99020D00003 / OF / ORFDO NIH HHS / United States
HHSN268201100046C / HL / NHLBI NIH HHS / United States
75N95020D00002 / DA / NIDA NIH HHS / United States
R01 HL086694 / HL / NHLBI NIH HHS / United States
N01HC65236 / HL / NHLBI NIH HHS / United States
L30 HG009840 / HG / NHGRI NIH HHS / United States
R01 HL138737 / HL / NHLBI NIH HHS / United States
HHSN268201100003C / WH / WHI NIH HHS / United States
U01 HG007376 / HG / NHGRI NIH HHS / United States
N01HC65235 / HL / NHLBI NIH HHS / United States
U01 HG004402 / HG / NHGRI NIH HHS / United States
N01HC95164 / HL / NHLBI NIH HHS / United States
N02HL64278 / HL / NHLBI NIH HHS / United States
N01HC95162 / HL / NHLBI NIH HHS / United States
N01HC65234 / HL / NHLBI NIH HHS / United States
N01HC95168 / HL / NHLBI NIH HHS / United States
HHSN268201200008C / HL / NHLBI NIH HHS / United States
75N90020D00003 / CL / CLC NIH HHS / United States
75N96020D00003 / ES / NIEHS NIH HHS / United States
P30 DK063491 / DK / NIDDK NIH HHS / United States
75N99020D00002 / OF / ORFDO NIH HHS / United States
N01HC65233 / HL / NHLBI NIH HHS / United States
HHSN268201700002C / HL / NHLBI NIH HHS / United States
R01 DK101855 / DK / NIDDK NIH HHS / United States
HHSN268201700001I / HL / NHLBI NIH HHS / United States
75N99020D00006 / OF / ORFDO NIH HHS / United States
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75N95020D00007 / DA / NIDA NIH HHS / United States
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T32 HL139439 / HL / NHLBI NIH HHS / United States
HHSN268201100002C / WH / WHI NIH HHS / United States
UL1 TR001420 / TR / NCATS NIH HHS / United States
R01 HL104608 / HL / NHLBI NIH HHS / United States
75N95020D00005 / DA / NIDA NIH HHS / United States
HHSN268201500003I / HL / NHLBI NIH HHS / United States
R01 HL142825 / HL / NHLBI NIH HHS / United States
HHSN268201700005C / HL / NHLBI NIH HHS / United States
HHSN268201700001C / HL / NHLBI NIH HHS / United States
75N99020D00005 / OF / ORFDO NIH HHS / United States
N01HC95167 / HL / NHLBI NIH HHS / United States
HHSN268201700003C / HL / NHLBI NIH HHS / United States
HHSN268201700004C / HL / NHLBI NIH HHS / United States
UL1 TR000040 / TR / NCATS NIH HHS / United States
HHSN268201100003I / HL / NHLBI NIH HHS / United States
HHSN268201100002I / HL / NHLBI NIH HHS / United States
HHSN268201700002I / HL / NHLBI NIH HHS / United States
HHSN268201700005I / HL / NHLBI NIH HHS / United States
75N98020D00007 / OD / NIH HHS / United States
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R01 HL087641 / HL / NHLBI NIH HHS / United States
HHSN268201700003I / HL / NHLBI NIH HHS / United States
HHSN268201200008I / HL / NHLBI NIH HHS / United States
HHSN268201100001C / WH / WHI NIH HHS / United States
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R01 HL111089 / HL / NHLBI NIH HHS / United States
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